COVID-19 Variants Analysis

Warning: Removed 404 row(s) containing missing values (geom_path).

Warning: Width not defined. Set with `position_dodge(width = ?)`
Warning in max(ids, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
Warning: Removed 7 row(s) containing missing values (geom_path).

Warning: Width not defined. Set with `position_dodge(width = ?)`
Warning in max(ids, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
Warning: Removed 206 row(s) containing missing values (geom_path).

Warning: Width not defined. Set with `position_dodge(width = ?)`
Warning in max(ids, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
Warning: Removed 45 row(s) containing missing values (geom_path).

Time Series Analysis

Max lag exceeds data available. Using max lag: 73
Max lag exceeds data available. Using max lag: 80
Max lag exceeds data available. Using max lag: 22

[1] "sf"         "data.frame"

Rows: 162,585
Columns: 3
$ date               <date> 2020-02-29, 2020-03-01, 2020-03-02, 2020-03-03, 2020-03-~
$ location           <chr> "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan~
$ new_cases_smoothed <dbl> 0.714, 0.714, 0.000, 0.000, 0.000, 0.000, 0.000, 0.429, 0~

$upper
'dendrogram' with 2 branches and 2 members total, at height 19255884 

$lower
$lower[[1]]
'dendrogram' with 2 branches and 202 members total, at height 5207258 

$lower[[2]]
'dendrogram' with 2 branches and 16 members total, at height 6715621 

Rows: 218
Columns: 2
$ Var1 <fct> Afghanistan, Africa, Albania, Algeria, Andorra, Angola, Anguilla, Antig~
$ Freq <int> 1, 2, 1, 1, 1, 1, 1, 1, 3, 1, 1, 3, 2, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1,~
Rows: 162,585
Columns: 4
$ date               <date> 2020-02-29, 2020-03-01, 2020-03-02, 2020-03-03, 2020-03-~
$ location           <chr> "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan~
$ new_cases_smoothed <dbl> 0.714, 0.714, 0.000, 0.000, 0.000, 0.000, 0.000, 0.429, 0~
$ cluster            <int> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, ~

  1   2   3   4 
181  21  15   1 

`geom_smooth()` using method = 'loess' and formula 'y ~ x'